Developed at the National Institute on Aging (NIA/NIH), Laboratory of Genetics, Baltimore MD

• False discovery rate (FDR)
• ANOVA with error variance correction
• 3D PCA/SVD-biplot
• PCA import for experiment comparison
• Pattern matching
• Optional permutation test
• Server-based software

Description of NIA Array Analysis tool

• General description
• Input data format
• Gene annotations
• ANOVA
• Hierarchical clustering
• Principal Component Analysis (PCA/SVD/biplot)
• Pattern matching

Do your own data analysis

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CisFinder = find DNA binding motifs from ChIP data
CisView = browser of regulatory regions in the mouse genome
NIA Mouse Gene Index
NIA Mouse cDNA project
SAM (significance analysis of microarrays)
TIGR array analysis software
Microarray Data Analysis resources

Reference:
Sharov, A.A., Dudekula, D.B., Ko, M.S.H. 2005. Principal component and significance analysis of microarrays with NIA Array Analysis tool. (Bioinformatics Advance Access)