Kozak Sequences of NIA 15k Set Help File

• SEQ_NAME- Name of Sequence analysis performed on.
  
  
• NO_IFTU- Number of In Frame Termination Units. That is, the number of stop codons seen upstream and in the same frame of the putative start codon.
  
  
• AALEN- Amino acid lenth of the translation of the putative ORF.
  
  
• NTLEN- Length of the nucleotide sequence of the putative ORF.
  
  
• FirstAA- The first amino acid of the putative ORF.
  
  
• ORFLT- The leftmost (most 5’ in the case of 5’ sequences) coordinate of the putative ORF.
  
  
• ORFRT- The rightmost (most 3’ in the case of 5’ sequences) coordinate of the putative ORF.
  
  

Note: Data only presented for the longest ORF found for the 5’ sequences of the NIA Mouse cDNA Clone Set. This file is structured to allow the user to combine this data with the data of the GeneID file by copying and pasting the desired columns. That is, we have included fields for all 15,247 clones, regardless of the existence of ORF or Kozak consensus sequence data.