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Description of Fields For NIA GeneID File |
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| Daughter | Rearrayed clone name |
| Parent | Source clone name |
| Clone Verification | Either the 3’ sequence or the 5’ sequence show sufficient homology to verify the address of the clone is correct. This field has a link to the sequence verification pages (with an arrow pointing at your clone of interest). |
| FullSeq | Value=’Y’ indicates full sequence for the clone is available. 3’ sequence and 5’ sequence assembled using Phred/Phrap system. This field has a link to the sequence pages for the cDNAs of interest. |
| Sequence Name (3') | 3' sequence of the Daughter Clone |
| 3' Sequence Verified | The 3’ sequence of the Daughter clone shows sufficient homology to the 3’ parent clone to verify the sequence. Values are ‘Y’= verified, ‘U’= Unvarifiable, <blank>=not verified, ‘O’=Orphan. An Orphan is any clone which has been sequence verified by multiple sequences obtained from the daughter clones, but does not match the sequence of the parent clone. |
| Length | Length of 3' sequence of the Daughter Clone |
| GenBank Accession (3') | GenBank Accession number of the 3' end Sequence of the Daughter Clone |
| 3' Putative Gene ID based on NIA Mouse Gene Index version 4 | The 3' Sequence Description is taken based on NIA Mouse Gene Index version 4 clustering. For more information please visit NIA Mouse Gene Index version 4 at http://lgsun.grc.nia.nih.gov/geneindex4/. |
| 3' Gene Symbol(s) based on NIA Mouse Gene Index version 4 'U' cluster | Gene symbol(s) of NIA Mouse Gene Index version 4 cluster in which 3' sequence present. |
| NIA Mouse Gene Index version 4 cluster | NIA Mouse Gene Index version 4 cluster in which 3' Sequence present. |
| Chromosome based on NIA Mouse Gene Index version 4 'U' cluster | NIA Mouse Gene Index version 4 cluster chromosome in which 3' sequence present. |
| Strand information based on NIA Mouse Gene Index version 4 'U' cluster | NIA Mouse Gene Index version 4 cluster chromosome strand in which 3' sequence present. |
| 3' sequence 'U' cluster chromosome start position based NIA Mouse Gene Index version 4 | NIA Mouse Gene Index version 4 cluster chromosome start position in which 3' sequence present. |
| 3' sequence 'U' cluster chromosome end position based NIA Mouse Gene Index version 4 | NIA Mouse Gene Index version 4 cluster chromosome end position in which 3' sequence present. |
| Sequence Name (5') | 5' sequence of the Daughter Clone |
| 5' Sequence Verified | The 5’ sequence of the Daughter clone shows sufficient homology to the 5’ parent clone to verify the sequence. Values are ‘Y’= verified, ‘U’= Unvarifiable, <blank>=not verified, ‘O’=Orphan. An Orphan is any clone which has been sequence verified by multiple sequences obtained from the daughter clones, but does not match the sequence of the parent clone. |
| Length | Length of 5' sequence of the Daughter Clone |
| GenBank Accession (5') | GenBank Accession number of the 5' end Sequence of the Daughter Clone |
| 5' Putative Gene ID based on NIA Mouse Gene Index version 4 | The 5' Sequence Description is taken based on NIA Mouse Gene Index version 4 clustering. For more information please visit NIA Mouse Gene Index version 4 at http://lgsun.grc.nia.nih.gov/geneindex4/. |
| 5' Gene Symbol(s) based on NIA Mouse Gene Index version 4 'U' cluster | Gene symbol(s) of NIA Mouse Gene Index version 4 cluster in which 5' sequence present. |
| NIA Mouse Gene Index version 4 cluster | NIA Mouse Gene Index version 4 cluster in which 5' Sequence present. |
| Chromosome based on NIA Mouse Gene Index version 4 'U' cluster | NIA Mouse Gene Index version 4 cluster chromosome in which 5' sequence present. |
| Strand information based on NIA Mouse Gene Index version 4 'U' cluster | NIA Mouse Gene Index version 4 cluster chromosome strand in which 5' sequence present. |
| 5' sequence 'U' cluster chromosome start position based NIA Mouse Gene Index version 4 | NIA Mouse Gene Index version 4 cluster chromosome start position in which 5' sequence present. |
| 5' sequence 'U' cluster chromosome end position based NIA Mouse Gene Index version 4 | NIA Mouse Gene Index version 4 cluster chromosome end position in which 5' sequence present. |
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