NIA Clone Set Gene Ontology Term Finder

NIA Clone Set Gene Ontology Term Finder (Last Update: 06/23/2003)

This GeneOntology Term Finder tool searches for GO terms used to describe the genes in NIA Microarray Gene list to help you discover what the genes may have in common. All the terms were extracted based on NIA CloneSet sequence presence in NCBI Mouse UniGene Cluster. This tool will generate data for each clone in the selected cloneset. You will find additional column(s) at the end of each row if it matches with your search criteria.

This tool will ask you to save the file when you click on the "Extract Data" button. Please save the file to your computer and open the file using Microsoft Excel. You can see embeded links in the Excel File
To get all the Gene Ontology Terms please don't enter any thing in the text box.

Step1: Select NIA Clone Set

Step2: Select NIA Clone Set Annotation fields you want. If you want all the fields please select "select all". If you need any help about any field please click on the field name link

Select All Parent Sequence Clone Verified Full Sequence 3' Sequence 3' Verified 3' Length 3' GenBank Accession 3'PutativeID Target Accession Alignment Score 5' Sequence 5' Verified 5' Length 5' GenBank Accession 5'PutativeID Target Accession Alignment Score

Step3: Select External Data (NCBI Mouse UniGene and TIGR Gene Index) Fields you want. If you want all the fields please select "select all".

Select All UniGeneID Gene Symbol LocusLink MGI Chromosome TIGR

Step4: Enter GeneOntology terms to be searched (maximum 10).
           To retrieve all the Gene Ontology Terms please don't enter anything in the text boxes.
           Please enter double quotes at the begining and ending of each term.
           To view terms by classification please click Biological Process Terms   Cellular Component Terms   Molecular Function Terms

(ex: Molecular Function as "binding")
(ex: Molecular Function as "transcription")
(ex: Molecular Function as "chromatin binding")
(ex: Cellular Component as "extracellular matrix")
(ex: Cellular Component as "nucleolus")
(ex: Biological Process as "apotosis")
(ex: Biological Process as "cell proliferation"

Step5: Select file output type (with links or without links)

Downloadable file with links Downloadable file without links

Step6: Please click on Extract Data Button to search

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