NIH Logo Key References GRC Logo

  1. Ko MSH. (1990). An "equalized cDNA library" by the reassociation of short double-stranded cDNAs. Nucleic Acids Research 18: 5705-5711.[Abs]

  2. Takahashi N and Ko MSH. (1993). The short 3'-end region of complementary DNAs as PCR-based polymorphic markers for an expression map of the mouse genome. Genomics 16: 161-168.[Abs]

  3. Ko MSH. (1995). Equalized cDNA libraries. In: Larrick JW and Siebert PD (eds), Reverse Transcriptase PCR. Ellis Horwood, London. pp. 245-264.

  4. Ko, M. S. H., Threat, T. A., Wang, X., Horton, J. H., Cui, Y., Pryor, E., Paris, J., Wells-Smith, J., Kitchen, J. R., Rowe, L. B., Eppig, J., Satoh, T., Brant, L., Fujiwara, H., Yotsumoto, S. and Nakashima, H. (1998). Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet 7: 1967-1978.[Abs]  PDF

  5. Schlessinger D and Ko MSH. (1998). Developmental Genomics and Its Relation to Aging. Genomics 52: 113-118.[Abs]

  6. Ko MSH, Kitchen JR, Wang X., Threat TA, Wang X, Hasegawa A, Sun T, Grahovac MJ, Kargul GJ, Lim MK, Cui Y, Sano Y, Tanaka T, Liang Y, Mason S, Paonessa PD, Sauls AD, DePalma GE, Sharara R, Rowe LB, Eppig J, Morrell C, Doi H (2000). Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment. Development 127, 1737-1749. [ Abs ] Alpha Cluster Page  PDF

  7. Tanaka TS, Jaradat SA, Lim MK, Kargul GJ, Wang X, Grahovac MJ, Pantano S, Sano Y, Piao Y, Nagaraja R, Doi H, Wood III WH, Becker KG, and Ko MSH (2000). Genome-wide expression profiling of mid-gestation placenta and embryo using 15k mouse developmental cDNA microarray. Proc. Natl. Acad. Sci. USA 97, 9127-9132. [ Abs ] PDF Microarray Data

  8. Kargul GJ, Dudekula DB, Qian Y, Lim MK, Jaradat SA, Tanaka TS, Carter MG, KO MS (2001). Verification and initial annotation of the NIA Mouse 15k cDNA Clone Set Nature Genetics 28(1):17-18. [ Abs ]  

  9. Yulan Piao, Naomi T. Ko, Meng K. Lim, Minoru S.H. Ko (2001) Construction of Long-Transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a Universal PCR Amplification Method Genome Research 11:1553-1558. [ Abs ]

  10. VanBuren V, Piao Y, Dudekula DB, Qian Y, Carter MG, Martin PR, Stagg CA, Bassey UC, Aiba K, Hamatani T, Kargul GJ, Luo AG, Kelso J, Hide W, Ko MS. (2002) Assembly, Verification, and Initial Annotation of the NIA Mouse 7.4K cDNA Clone Set. Genome Research 12:1999-2003 [ Abs ]

  11. Tanaka TS, Kunath T, Kimber WL, Jaradat SA, Stagg CA, Usuda M, Yokota T, Niwa H, Rossant J, Ko MS. (2002) Gene Expression Profiling of Embryo-Derived Stem Cells Reveals Candidate Genes Associated With Pluripotency and Lineage Specificity Genome Research 12:1921-1928 [ Abs ]  Microarray Data

  12. Suemizu H, Aiba K, Yoshikawa T, Sharov AA, Shimozawa N, Tamaoki N, Ko MS. (2003) Expression Profiling of Placentomegaly Associated with Nuclear Transplantation of Mouse ES Cells. Developmental Biology 253(1):36-53 [ Abs ]

  13. Carter MG, Hamatani T, Sharov AA, Carmack CE, Qian Y, Aiba K, Ko NT, Dudekula DB, Brzoska PM, Hwang SS, Ko MS. (2003) In situ-synthesized novel microarray optimized for mouse stem cell and early developmental expression profiling. Genome Research 13(5):1011-1021 [ Abs ]

  14. Carter MG, Piao Y, Dudekula DB, Qian Y, VanBuren V, Sharov AA, Tanaka TS, Martin PR, Bassey UC, Stagg CA, Aiba K, Hamatani T, Matoba R, Kargul GJ, Ko MS (2003) The NIA cDNA project in mouse stem cells and early embryos. C R Biol. 326(10-11):931-40 [ Abs ]

  15. Alexei A. Sharov, Yulan Piao, Ryo Matoba, Dawood B. Dudekula, Yong Qian, Vincent VanBuren, Geppino Falco, Patrick R. Martin, Carole A. Stagg, Uwem C. Bassey, Yuxia Wang, Mark G. Carter, Toshio Hamatani, Kazuhiro Aiba, Hidenori Akutsu, Lioudmila Sharova, Tetsuya S. Tanaka, Wendy L. Kimber, Toshiyuki Yoshikawa, Saied A. Jaradat, Serafino Pantano, Ramaiah Nagaraja, Kenneth R. Boheler, Dennis Taub, Richard J. Hodes, Dan L. Longo, David Schlessinger, Jonathan Keller, Emily Klotz, Garnett Kelsoe, Akihiro Umezawa, Angelo L. Vescovi, Janet Rossant, Tilo Kunath, Brigid L. M. Hogan, Anna Curci, Michele D'Urso, Janet Kelso, Winston Hide, Minoru S. H. Ko (2003) Transcriptome Analysis of Mouse Stem Cells and Early Embryos. PLoS Biology 1(3) Dec 2003  [ Abs ]  [ PDF ]

  16. Hamatani T, Carter MG, Sharov AA, Ko MS. (2004) Dynamics of Global Gene Expression Changes during Mouse Preimplantation Development Developmental Cell 6(1): 117-31 [ Abs ]  [ Microarray Data ]

  17. Hamatani T, Daikoku T, Wang H, Matsumoto H, Carter MG, Ko MS, Dey SK (2004) Global gene expression analysis identifies molecular pathways distinguishing blastocyst dormancy and activation. Proc. Natl. Acad. Sci. USA July [ Abs ]

  18. Hamatani T, Falco G, Carter MG, Akutsu H, Stagg CA, Sharov AA, Dudekula DB, VanBuren V, Ko MS (2004) Age-associated alteration of gene expression patterns in mouse oocytes. Hum Mol Genet. 2004 Oct 1;13(19):2263-2278 [ Abs ]

  19. Sharov AA, Dudekula DB, Ko MS (2005) A web-based tool for principal component and significance analysis of microarray data.Bioinformatics Advance Access published online on February 25, 2005 [ Abs ] 

  20. Sharov AA, Dudekula DB, Ko MS (2005) Genome-wide assembly and analysis of alternative transcripts in mouse Genome Research  [ Abs ]  [ PDF ] 

  21. Carter MG, Sharov AA, Vanburen V, Dudekula DB, Carmack CE, Nelson C, Ko MSH (2005) Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray.Genome Biology 2005;6(7):R61 [ Abs ]  [ PDF ] 

  22. Yoshikawa T, Piao Y, Zhong J, Matoba R, Carter MG, Wang Y, Goldberg I, Ko MS (2005). High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization.Gene Expression Patterns 2005; [ Abs ]  

  23. Aiba K, Sharov AA, Carter MG, Foroni C, Vescovi AL, Ko MS (2005). Defining a developmental path to neural fate by global expression profiling of mouse embryonic stem cells and adult neural stem/progenitor cells.Stem Cells 2006 Apr;24(4):889-95. Epub 2005 Dec 15 [ Abs ]  

  24. Tanaka TS, Lopez de Silanes I, Sharova LV, Akutsu H, Yoshikawa T, Amano H, Yamanaka S, Gorospe M, Ko MS. (2006). Esg1, expressed exclusively in preimplantation embryos, germline, and embryonic stem cells, is a putative RNA-binding protein with broad RNA targets.Development, growth & differentiation 2006 Aug;48(6):381-90 [ Abs ]  

  25. Sharov AA, Dudekula DB, Ko MS.(2006). CisView: a browser and database of cis-regulatory modules predicted in the mouse genome.DNA research 2006 Jun 30;13(3):123-34. Epub 2006 Sep 15. [ Abs ]  

  26. Falco G, Stanghellini I, Ko MS.(2006) Use of Chuk as an internal standard suitable for quantitative RT-PCR in mouse preimplantation embryosReprod Biomed Online 2006 Sep;13(3):394-403 [ Abs ]  

  27. Matoba R, Niwa H, Masui S, Ohtsuka S, Carter MG, Sharov AA, Ko MS. (2006) Dissecting oct3/4-regulated gene networks in embryonic stem cells by expression profiling.PLoS ONE 2006 Dec 20;1:e26 [ Abs ]  

  28. Masui S, Nakatake Y, Toyooka Y, Shimosato D, Yagi R, Takahashi K, Okochi H, Okuda A, Matoba R, Sharov AA, Ko MS, Niwa H. (2007)  Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells. Nat Cell Biol. 2007 May 21; [Epub ahead of print]  [ Abs ]  


[ NIH Home Page ]   [ NIA Home Page ] [ NIA Intramural Research Program ]
Department of Health and Human Services
Send comments to dudekuladb@grc.nia.nih.gov