NIA Mouse Gene Index
NIA Mouse Gene Index
Gene Index
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Project objectives:

  1. Assemble mouse transcripts from public data (GenBank, Ensembl, DBEST)
  2. Analyze alternative transcription and splicing at the genome-wide scale
  3. Identify transcription start, ORF, protein domains, Gene Ontology (GO) terms
  4. Develop software for visualization and analysis of individual genes and gene sets
Find a gene in the latest genome assembly (mm9)

Upload list of genes to find Gene Ontology (GO) terms, protein domains, and distribution in the genome
Upload sequence to match with the genome (BLAT)
Advanced search of genes based on properties, location, GO, protein domains, etc.

Select chromosome to browse

Reference: Sharov AA, Dudekula DB, Ko MS. 2005. Genome-wide assembly and analysis of alternative transcripts in mouse. Genome Res. 15(5):748-54.

Download data and software

Select Mouse Genome Assembly

  • mm9 (Genome Jul 2007)
  • mm8 (Genome Mar 2006)

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