NIA Mouse Gene Index

	NIA Mouse Gene Index(Version 1) Sharov et al. 2003. PLoS Biology 1: 410-419
[ Late Version of NIA Mouse Gene Index ]

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NAP sequences in fasta format
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Possible Intronic Transcript Sequences list
U-cluster members
U-clusters that are genes (ORF >=100 aa. or multi-exon)
Comparison with other databases
NIA Mouse Gene Index Version 2 (based on Feb 2003 UCSC Mouse Genome)

NIA GENE INDEX SUMMARY TABLE

Number of exons	N	1	N	1	N	1	N	1	N	1	N	1
M & Kozak	yes	yes	no	no	yes	yes	no	no	yes	yes	no	no
ORF length	long	long	long	long	medium	medium	medium	medium	short	short	short	short	Total	Genes
NIA Rik Ens Ref NM
+ - - - -	10	1	13	10	34	72	138	323	74	903	302	3444	5324	977
- + - - -	75	32	185	125	216	233	1005	1063	594	801	1830	2688	8847	5358
+ + - - -	30	14	49	18	27	37	91	198	41	144	104	408	1161	609
- - + - -	140	31	763	230	79	56	385	274	22	44	126	261	2411	2106
+ - + - -	30	12	103	16	7	14	15	15	2	7	3	3	227	217
- + + - -	132	14	293	25	35	37	118	60	11	5	16	18	764	741
+ + + - -	135	4	242	16	11	12	24	13	7	1	7	3	475	471
- - - + -	8	37	39	162	45	92	60	200	8	47	23	159	880	674
+ - - + -	18	15	51	32	24	14	37	37	3	5	3	5	244	234
- + - + -	60	16	123	30	79	18	169	65	34	11	37	15	657	631
+ + - + -	61	8	125	17	25	5	37	28	4	4	6	3	323	316
- - + + -	84	70	488	378	27	98	122	153	2	9	7	10	1448	1429
+ - + + -	97	12	281	25	17	11	19	17	3	1			483	482
- + + + -	379	26	757	57	121	44	176	54	6	3	2	1	1626	1622
+ + + + -	986	15	1713	26	72	10	71	9	2				2904	2904
- - - + +	8	6	15	145	2	4	9	6	5		2	4	206	202
+ - - + +	2		6	4	2		2	1					17	17
- + - + +	16	5	30	13	6	10	15	10	2		1		108	108
+ + - + +	14	9	28	4	9	1	11	1	3		4		84	84
- - + + +	295	29	484	567	58	15	86	27	14	6	14	10	1605	1589
+ - + + +	326	6	396	16	34	4	33	5	4	1	3		828	827
- + + + +	754	49	976	61	200	28	202	37	27	5	14	1	2354	2348
+ + + + +	2276	37	2828	42	322	12	281	21	27	1	18	3	5868	5864
Total	5936	448	9988	2019	1452	827	3106	2617	895	1998	2522	7036	38844	29810

Click on the number in the table to see a list of genes in each category. To navigate within the list use forward and backward buttons only. If you click on a neighboring gene in the chromosome you will switch to the list of genes in that chromosome.