NIA Mouse Gene Index

NIA Mouse Gene Index 4.0

Download NIA Mouse Gene Index ver.4

Supplementary Tables (MS Excel)

Table 1. Genes and gene candidates in the mouse genome and their characteristics
Table 2. Alternative transcription/splicing (ATS) sites in the mouse genome
Table 3. Transcripts with a new combination of exons or their parts (different by >30bp)

U-clusters (genes, gene candidates, and non-genes)

	Annotations	Field annotations
	Members and attributes	Field annotations
	Genes and gene candidates	Field annotations
	Exon scheme	Field annotations
	Virtual sequences (fasta)
	Major transcripts for each gene	Field annotations
	Potentially wrong strand	Field annotations

Transcripts

	Annotations	Field annotations
	Sequences (fasta)
	Members and attributes	Field annotations
	Genome alignment (BLAT-psl)	Field annotations
	Member alignment (BLAT-psl)	Field annotations
	ORF attributes	Field annotations
	ORF sequences (fasta)
	Sequence repeats	Field annotations
	Transcripts in GFF format

Comparison of UniGene, TIGR, DoTS, and ESTGenes with NIA Gene Index

	UniGene
	TIGR gene index
	DoTS gene index
	ESTGenes gene index
	NIA vs, UniGene, TIGR, DoTS, and ESTGenes

Comparison with other databases

Miscellaneous

	Alignments deleted	Field annotations
	Alignments truncated	Field annotations

Software for gene index assembly

	Psl2gff Perl code to convert BLAT format to GFF
	Gene Index Assembly Software (zipped)
	Read-me file