CisView: Mouse (mm6, March2005)
Transcription factor binding site ADD_CIZ

Source: Nakamoto T, Yamagata T, Sakai R, Ogawa S, Honda H, Ueno H, Hirano N, Yazaki Y, Hirai H. 2000. CIZ, a zinc finger protein that interacts with p130(cas) and activates the expression of matrix metalloproteinases. Mol Cell Biol. 20:1649-58.
TF group: CIZ       TFBS class: ZF = Zinc finger       Code: 2.3
Pattern = SAAAAAVYH (core elements are bold)     Class: CIZ     Allowed mismatch: 0.004
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Position weight matrix:
positionACGT
1
017220
2
39000
3
39000
4
39000
5
39000
6
39000
7
1510131
8
513615
9
91578

Genes (trans-elements):
U-clusterSymbol
Annotation
U001618Ciz1CDKN1A interacting zinc finger protein 1

GO terms:
GO:0008270 zinc ion binding
GO:0005681 spliceosome complex
GO:0006397 mRNA processing
GO:0003723 RNA binding
GO:0000398 nuclear mRNA splicing, via spliceosome

Protein domains:
IPR003604 Zn-finger, U1-like
IPR001093 IMP dehydrogenase/GMP reductase
IPR000690 Zn-finger, C2H2 matrin type
IPR011051 RmlC-like cupin
IPR011001 Saposin-like
IPR007087 Zn-finger, C2H2 type

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend