CisView: Mouse (mm6, March2005)
Transcription factor binding site ADD_CTCFA

Source: Szabo PE, Tang SH, Silva FJ, Tsark WM, Mann JR. 2004. Role of CTCF binding sites in the Igf2/H19 imprinting control region. Mol Cell Biol. 24: 4791-800.
TF group: CTCF
Pattern = CCGCRYGGYGGCAG (used as matrix, core elements are bold)     Class: CTCF     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U009750CtcfCCCTC-binding factor
U197485BorisMus musculus BORIS (Boris) mRNA, complete cds.

GO terms:
GO:0008270 zinc ion binding
GO:0045786 negative regulation of cell cycle
GO:0006306 DNA methylation
GO:0009048 dosage compensation, by inactivation of X chromosome
GO:0007049 cell cycle
GO:0006349 imprinting

Protein domains:
IPR007087 Zn-finger, C2H2 type

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

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