CisView: Mouse (mm6, March2005)
Transcription factor binding site ADD_FOXJ1

Source: Lim L, Zhou H, Costa RH. 1997. The winged helix transcription factor HFH-4 is expressed during choroid plexus epithelial development in the mouse embryo. Proc Natl Acad Sci USA. 94:3094-9.
TF group: FOXJ1       TFBS class: FH = Fork head       Code: 3.3
Pattern = TGTTTGTTTA (core elements are bold)     Class: FOXJ1     Allowed mismatch: 0.159
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Position weight matrix:
positionACGT
1
18301275
2
267948
3
9811107
4
772119
5
998109
6
1779912
7
7173108
8
7523100
9
1317699
10
9722412

Genes (trans-elements):
U-clusterSymbol
Annotation
U009892Foxf1aforkhead box F1a
U085978Foxj1forkhead box J1

GO terms:
GO:0007389 pattern specification
GO:0030324 lung development
GO:0009887 organogenesis
GO:0001570 vasculogenesis
GO:0035089 establishment of apical/basal cell polarity
GO:0042384 cilium biogenesis

Protein domains:
IPR001766 Fork head transcription factor

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend