CisView: Mouse (mm6, March2005)
Transcription factor binding site ADD_HMG

Source: Schlierf B, Ludwig A, Klenovsek K, Wegner M. 2002.Cooperative binding of Sox10 to DNA: requirements and consequences. Nucleic Acids Res. 30:5509-16.
TF group: HMG       Code: 0.2.1.0
Pattern = WWCAAWG     Class: HMG     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U032043Hmg20bhigh mobility group 20 B
U032280Hmga2high mobility group AT-hook 2

GO terms:
GO:0000785 chromatin
GO:0006323 DNA packaging
GO:0007186 G-protein coupled receptor protein signaling pathway
GO:0006418 tRNA aminoacylation for protein translation
GO:0005524 ATP binding
GO:0005694 chromosome
GO:0016568 chromatin modification
GO:0004974 leukotriene receptor activity
GO:0004812 tRNA ligase activity
GO:0007049 cell cycle
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
GO:0000228 nuclear chromosome

Protein domains:
IPR009071 High mobility group box
IPR000135 High mobility group proteins HMG1 and HMG2
IPR003982 Leukotriene B4 type 2 receptor
IPR000637 HMG-I and HMG-Y, DNA-binding
IPR000116 High mobility group proteins HMG-I and HMG-Y
IPR001412 Aminoacyl-tRNA synthetase, class I
IPR000910 HMG1/2 (high mobility group) box

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend