CisView: Mouse (mm6, March2005)
Transcription factor binding site ADD_MEL18

Source: Bina M, Wyss P, Ren W, Szpankowski W, Thomas E, Randhawa R, Reddy S, John PM, Pares-Matos EI, Stein A, Xu H, Lazarus SA. 2004. Exploring the characteristics of sequence elements in proximal promoters of human genes. Genomics. 84:929-40.
TF group: MEL18       TFBS class: ZF = Zinc finger       Code: 2.3
Pattern = GACTNGACT     Class: MEL18     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U033345Pcgf2polycomb group ring finger 2

GO terms:
GO:0004842 ubiquitin-protein ligase activity
GO:0016469 proton-transporting two-sector ATPase complex
GO:0015986 ATP synthesis coupled proton transport
GO:0046961 hydrogen-transporting ATPase activity, rotational mechanism
GO:0008270 zinc ion binding
GO:0000151 ubiquitin ligase complex
GO:0005524 ATP binding
GO:0016567 protein ubiquitination
GO:0046933 hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0016604 nuclear body

Protein domains:
IPR000194 H+-transporting two-sector ATPase, alpha/beta subunit, central region
IPR001841 Zn-finger, RING

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

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