TFBS = ADD

CisView: Mouse (mm6, March2005)

Transcription factor binding site ADD_NANOG

Source: Mitsui K, Tokuzawa Y, Itoh H, Segawa K, Murakami M, Takahashi K, Maruyama M, Maeda M, Yamanaka S. 2003. The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell 113:631-42.
TF group: NANOG TFBS class: HOX = Homeobox Code: 3.1.1
Pattern = RSCSATTAWS (core elements are bold) Class: NANOG Allowed mismatch: 0.09
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Position weight matrix:

position A C G T
1 34 9 57 0
2 8 49 35 8
3 7 80 8 5
4 0 41 56 3
5 91 0 6 3
6 0 0 0 100
7 0 0 0 100
8 86 0 5 9
9 48 0 24 28
10 5 39 51 5

Genes (trans-elements):

U-cluster Symbol Annotation
U007377 Nanog Nanog homeobox

GO terms:
GO:0017145 stem cell division

Protein domains:
IPR009057 Homeodomain-like
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

position	A	C	G	T
1	34	9	57	0
2	8	49	35	8
3	7	80	8	5
4	0	41	56	3
5	91	0	6	3
6	0	0	0	100
7	0	0	0	100
8	86	0	5	9
9	48	0	24	28
10	5	39	51	5

Legend