TFBS = ADD

CisView: Mouse (mm6, March2005)

Transcription factor binding site ADD_NCX

Source: Shimizu H, Kang M, Iitsuka Y, Ichinose M, Tokuhisa T, Hatano M. 2000. Identification of an optimal Ncx binding sequence required for transcriptional activation. FEBS Lett. 475:170-174.
TF group: NCX TFBS class: HOX = Homeobox Code: 3.1.1
Pattern = YNGTAABKNG (core elements are bold) Class: NCX Allowed mismatch: 0.06
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Position weight matrix:

position A C G T
1 10 32 16 17
2 21 15 24 15
3 11 10 38 16
4 10 12 6 47
5 41 15 10 9
6 43 11 7 14
7 11 16 17 31
8 9 8 31 27
9 15 23 24 13
10 15 9 41 10

Genes (trans-elements):

U-cluster Symbol Annotation
U027518 Tlx2 T-cell leukemia, homeobox 2

Protein domains:
IPR009057 Homeodomain-like
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

position	A	C	G	T
1	10	32	16	17
2	21	15	24	15
3	11	10	38	16
4	10	12	6	47
5	41	15	10	9
6	43	11	7	14
7	11	16	17	31
8	9	8	31	27
9	15	23	24	13
10	15	9	41	10

U-cluster	Symbol	Annotation
U027518	Tlx2	T-cell leukemia, homeobox 2

Legend