CisView: Mouse (mm6, March2005)
Transcription factor binding site ADD_PAX8

Source: Pellizzari L, Fabbro D, Longigro R, Dilauro R, Damante G. 1996 A network of specific minor-groove contacts is a common characteristic of paired-domain-DNA interactions. Biochem. J. 315:363-367.
TF group: PAX8       TFBS class: PAX = Paired box       Code: 3.2.2.1.1
Pattern = WYGCRTGADH (core elements are bold)     Class: PAX8     Allowed mismatch: 0.057     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Position weight matrix:
positionACGT
1
2010820
2
1216426
3
47407
4
143194
5
183325
6
32647
7
52447
8
365125
9
1772212
10
1413922

Genes (trans-elements):
U-clusterSymbol
Annotation
U022363Pax8paired box gene 8

GO terms:
GO:0006228 UTP biosynthesis
GO:0007275 development
GO:0006183 GTP biosynthesis
GO:0009887 organogenesis
GO:0004550 nucleoside-diphosphate kinase activity
GO:0005524 ATP binding
GO:0006241 CTP biosynthesis
GO:0030154 cell differentiation

Protein domains:
IPR001093 IMP dehydrogenase/GMP reductase
IPR009057 Homeodomain-like
IPR001523 Paired box protein, N-terminal
IPR001564 Nucleoside diphosphate kinase

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend