TFBS = ADD

CisView: Mouse (mm6, March2005)

Transcription factor binding site ADD_WHN

Source: Schlake T, Schorpp M, Nehls M, Boehm T. 1997 The nude gene encodes a sequence-specific DNA binding protein with homologs in organisms that lack an anticipatory immune system. Proc Natl Acad Sci U S A. 94:3842-7.
TF group: WHN TFBS class: FH = Fork head Code: 3.3.1.0.11
Pattern = ARBGACGCT (core elements are bold) Class: WHN Allowed mismatch: 0.042 Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Position weight matrix:

position A C G T
1 59 10 10 21
2 40 16 32 12
3 12 32 28 28
4 9 19 66 6
5 100 0 0 0
6 0 100 0 0
7 0 0 100 0
8 0 100 0 0
9 8 19 18 55

Genes (trans-elements):

U-cluster Symbol Annotation
U033130 Foxn1 forkhead box N1

GO terms:
GO:0007275 development
GO:0030216 keratinocyte differentiation

Protein domains:
IPR001766 Fork head transcription factor

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

position	A	C	G	T
1	59	10	10	21
2	40	16	32	12
3	12	32	28	28
4	9	19	66	6
5	100	0	0	0
6	0	100	0	0
7	0	0	100	0
8	0	100	0	0
9	8	19	18	55

Legend