CisView: Mouse (mm6, March2005)
Transcription factor binding site MIT_011GABP

Source: Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. 2005. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434(7031):338-345.
TF group: GABP       TFBS class: MYB/ETS = Tryptophan clusters       Code: 3.5.2.0.12
Pattern = MGGAAGTG     Class: GABP     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U043544GabpaGA repeat binding protein, alpha
U040971Gabpb1GA repeat binding protein, beta 1
U024357Gabpb2GA repeat binding protein, beta 2

GO terms:
GO:0042803 protein homodimerization activity

Protein domains:
IPR001093 IMP dehydrogenase/GMP reductase
IPR002110 Ankyrin
IPR000418 Ets
IPR003118 Sterile alpha motif/pointed
IPR010993 Sterile alpha motif homology
IPR002035 von Willebrand factor, type A
IPR002341 HSF/ETS, DNA-binding

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend