CisView: Mouse (mm6, March2005)
Transcription factor binding site MIT_038SF1

Source: Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. 2005. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434(7031):338-345.
TF group: SF1       TFBS class: HR = Hormone receptor       Code: 2.1.2.18.1.1
Pattern = TGACCTTG     Class: SF1     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U038689Zfp162zinc finger protein 162

GO terms:
GO:0004969 histamine receptor activity
GO:0000398 nuclear mRNA splicing, via spliceosome
GO:0007186 G-protein coupled receptor protein signaling pathway
GO:0006397 mRNA processing
GO:0003723 RNA binding
GO:0005681 spliceosome complex

Protein domains:
IPR003980 Histamine H3 receptor
IPR001093 IMP dehydrogenase/GMP reductase
IPR004088 KH, type 1
IPR004087 KH
IPR001878 Zn-finger, CCHC type

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend