CisView: Mouse (mm6, March2005)
Transcription factor binding site MIT_048NFKB

Source: Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. 2005. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434(7031):338-345.
TF group: NFKB       TFBS class: RHR = Rel homology region       Code: 4.1.1.0
Pattern = GCGNNANTTCC     Class: NFKB     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U029454Deaf1deformed epidermal autoregulatory factor 1 (Drosophila)

Protein domains:
IPR010919 SAND-like
IPR002893 Zn-finger, MYND type
IPR001093 IMP dehydrogenase/GMP reductase
IPR000770 SAND

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend