CisView: Mouse (mm6, March2005)
Transcription factor binding site MIT_056PAX4

Source: Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. 2005. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434(7031):338-345.
TF group: PAX4       TFBS class: PAX = Paired box       Code: 3.2.1.0.7.1
Pattern = GGGTGGRR     Class: PAX4     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U027102Pax4paired box gene 4

GO terms:
GO:0030154 cell differentiation
GO:0007275 development
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0009887 organogenesis
GO:0045597 positive regulation of cell differentiation
GO:0045595 regulation of cell differentiation

Protein domains:
IPR009057 Homeodomain-like
IPR001356 Homeobox
IPR007104 Paired-like homeobox
IPR001523 Paired box protein, N-terminal

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend