CisView: Mouse (mm6, March2005)
Transcription factor binding site MIT_061LHX

Source: Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. 2005. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434(7031):338-345.
TF group: LHX       TFBS class: LIM-homeo       Code: 3.1.3.1.5
Pattern = YTAATTAA     Class: LHX     Allowed mismatch: 0.2     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U022415Lhx3LIM homeobox protein 3

GO terms:
GO:0008270 zinc ion binding

Protein domains:
IPR007107 LIM homeobox
IPR009057 Homeodomain-like
IPR001093 IMP dehydrogenase/GMP reductase
IPR001781 Zn-binding protein, LIM
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend