CisView: Mouse (mm6, March2005)
Transcription factor binding site MIT_084HNF1

Source: Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. 2005. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434(7031):338-345.
TF group: HNF1       TFBS class: HOX = Homeobox       Code: 3.1.1.12
Pattern = RGTTAMWNATT     Class: HNF1     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U026615Tcf1transcription factor 1

GO terms:
GO:0045941 positive regulation of transcription
GO:0016563 transcriptional activator activity

Protein domains:
IPR006898 Hepatocyte nuclear factor 1, alpha isoform C-terminal
IPR009057 Homeodomain-like
IPR006897 Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR010982 Lambda repressor-like, DNA-binding
IPR010981 SinR repressor-like, dimerisation
IPR006899 Hepatocyte nuclear factor 1, N-terminal
IPR001093 IMP dehydrogenase/GMP reductase
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend