CisView: Mouse (mm6, March2005)
Transcription factor binding site MIT_131GATA

Source: Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. 2005. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434(7031):338-345.
TF group: GATA       TFBS class: ZF = Zinc finger       Code: 2.2.1.1
Pattern = GATAAGR     Class: GATA     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Genes (trans-elements):
U-clusterSymbol
Annotation
U039236Gata1GATA binding protein 1
U007146Gata2GATA binding protein 2
U022278Gata3GATA binding protein 3
U035668Gata4GATA binding protein 4
U023762Gata5GATA binding protein 5
U018415Gata6GATA binding protein 6

GO terms:
GO:0008270 zinc ion binding
GO:0045941 positive regulation of transcription
GO:0016563 transcriptional activator activity
GO:0001701 embryonic development (sensu Mammalia)
GO:0006909 phagocytosis
GO:0001709 cell fate determination
GO:0005198 structural molecule activity
GO:0001889 liver development
GO:0007507 heart development
GO:0007018 microtubule-based movement
GO:0005874 microtubule
GO:0030182 neuron differentiation

Protein domains:
IPR000679 Zn-finger, GATA type
IPR008013 GATA-type transcription activator, N-terminal
IPR006209 EGF-like
IPR001093 IMP dehydrogenase/GMP reductase
IPR000217 Tubulin

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend