CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_ARNT

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: ARNT       TFBS class: bHLH = Helix-loop-helix       Code: 1.2
Pattern = TCACGTGM (core elements are bold)     Class: ARNT     Allowed mismatch: 0.156     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$ARNT_01 __NDDNNCACGTGNNN
+
V$ARNT_02 NNNNNRTCACGTGAYNNNNN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U033731Stra13stimulated by retinoic acid 13

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend