CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_BRACH

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: BRACH       TFBS class: T-box
Pattern = ACACCTAGGTGT (core elements are bold)     Class: BRACH     Allowed mismatch: 0.2     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$BRACH_01 MKHNTSACACCTAGGTGTGAAATT
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U017472Tbrachyury
U129118T2brachyury 2

Protein domains:
IPR008967 p53-like transcription factor, DNA-binding
IPR001699 Transcription factor, T-box
IPR002070 Transcription factor, Brachyury

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend