CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_BRN

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: BRN       TFBS class: POU = Octamer (POU)       Code: 3.1.2.3.2.1
Pattern = CATBSRWAATR (core elements are bold)     Class: BRN     Allowed mismatch: 0.064
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$BRN2_01 NNCATNSRWAATNMRN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U024883Pou3f2POU domain, class 3, transcription factor 2

Protein domains:
IPR009057 Homeodomain-like
IPR010982 Lambda repressor-like, DNA-binding
IPR000327 POU
IPR007103 POU homeobox
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend