CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_CDP

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: CDP       TFBS class: HOX = Homeobox       Code: 3.1.1.4.1
Pattern = NNKATCGATYAK (core elements are bold)     Class: CDP     Allowed mismatch: 0.154     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$CDP_02 NWNATCGATTANYNN
+
V$CDPCR1_01 WCGATCGATN
-
V$CDPCR3HD_01 WWWATCRATN
-

Genes (trans-elements):
U-clusterSymbol
Annotation
U026833Cutl1cut-like 1 (Drosophila)

GO terms:
GO:0042491 auditory receptor cell differentiation
GO:0030324 lung development
GO:0007275 development
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0016564 transcriptional repressor activity

Protein domains:
IPR007108 Cut homeobox
IPR009057 Homeodomain-like
IPR011072 Protein kinase PKN/PRK1, effector
IPR003350 Homeodomain protein CUT
IPR001093 IMP dehydrogenase/GMP reductase
IPR010978 tRNA-binding arm
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend