CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_CDX

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: CDX       TFBS class: HOX = Homeobox       Code: 3.1.1.3
Pattern = MTTTATR (core elements are bold)     Class: CDX     Allowed mismatch: 0.014
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$CDXA_01 MTTTATR
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U020094Cdx4caudal type homeo box 4
U026963Cdx2caudal type homeo box 2
U038465Cdx1caudal type homeo box 1

GO terms:
GO:0007275 development
GO:0007389 pattern specification
GO:0000794 condensed nuclear chromosome

Protein domains:
IPR000047 Helix-turn-helix motif, lambda-like repressor
IPR009057 Homeodomain-like
IPR006820 Caudal-like activation region
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend