CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_CHX

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: CHX       TFBS class: HOX = Homeobox       Code: 3.1.1
Pattern = TAATTAGC (core elements are bold)     Class: CHX     Allowed mismatch: 0.166     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$CHX10_01 NNNTAATTAGCNNN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U014197Chx10C. elegans ceh-10 homeo domain containing homolog

GO terms:
GO:0001747 eye morphogenesis (sensu Mammalia)
GO:0007275 development
GO:0045165 cell fate commitment

Protein domains:
IPR006209 EGF-like
IPR009057 Homeodomain-like
IPR001093 IMP dehydrogenase/GMP reductase
IPR001356 Homeobox
IPR007104 Paired-like homeobox
IPR003654 Paired-like homeodomain protein, OAR

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend