CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_COMP

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: COMP
Pattern = TGATTGACRACAA (core elements are bold)     Class: COMP     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$COMP1_01 NVTNWTGATTGACNACAAVARRBN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U135840Compcartilage oligomeric matrix protein

GO terms:
GO:0005509 calcium ion binding
GO:0005576 extracellular region
GO:0007155 cell adhesion

Protein domains:
IPR006210 Type I EGF
IPR003367 Thrombospondin type 3 repeat
IPR006209 EGF-like
IPR001881 EGF-like calcium-binding
IPR000742 EGF-like, subtype 2
IPR008859 Thrombospondin, C-terminal
IPR008985 Concanavalin A-like lectin/glucanase
IPR002048 Calcium-binding EF-hand
IPR001093 IMP dehydrogenase/GMP reductase
IPR009030 Growth factor, receptor

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend