CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_COUP

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: COUP       TFBS class: HR = Hormone receptor       Code: 2.1.2
Pattern = TGAMCTTTGMMC (core elements are bold)     Class: COUP     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$COUP_01 TGAMCTTTGMMCYT
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U002787Hnf4ahepatic nuclear factor 4, alpha

GO terms:
GO:0004872 receptor activity
GO:0004879 ligand-dependent nuclear receptor activity
GO:0003707 steroid hormone receptor activity
GO:0005496 steroid binding

Protein domains:
IPR008946 Steroid nuclear receptor, ligand-binding
IPR000324 Vitamin D receptor
IPR000003 Retinoid X receptor
IPR001723 Steroid hormone receptor
IPR000536 Ligand-binding region of nuclear hormone receptor
IPR001628 Zn-finger, C4-type steroid receptor

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend