CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_E47

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: E47       TFBS class: bHLH = Helix-loop-helix       Code: 1.2.1.0.1.2
Pattern = RCAGGTGT (core elements are bold)     Class: E47     Allowed mismatch: 0.038     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$E47_01 _VSNGCAGGTGKNCN
+
V$E47_02 NNNMRCAGGTGTTMNN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U032010Tcfe2atranscription factor E2a

GO terms:
GO:0042803 protein homodimerization activity
GO:0046982 protein heterodimerization activity

Protein domains:
IPR009057 Homeodomain-like
IPR001092 Basic helix-loop-helix dimerisation region bHLH
IPR001093 IMP dehydrogenase/GMP reductase

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend