CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_EF1D

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: EF1D       TFBS class: CH+homeo       Code: 3.1.4.0.4
Pattern = CACCTDA (core elements are bold)     Class: EF1D     Allowed mismatch: 0.009
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$DELTAEF1_01 NNNCACCTNAN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U017742Def6differentially expressed in FDCP 6

GO terms:
GO:0005509 calcium ion binding

Protein domains:
IPR001849 Pleckstrin-like
IPR002048 Calcium-binding EF-hand
IPR001093 IMP dehydrogenase/GMP reductase

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend