CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_GATA

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: GATA       TFBS class: ZF = Zinc finger       Code: 2.2.1.1
Pattern = AGATAAKR (core elements are bold)     Class: GATA     Allowed mismatch: 0.018
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$GATA3_01 ___NNGATARNG
+
V$GATA1_02 NNNNNGATANKGNN
+
V$GATA1_03 RNSNDGATTANNGN
+
V$GATA1_04 _NNCWGATARNNN
+
V$GATA_C ____NGATAAG
+
V$GATA1_05 __NCWGATAACA
+
V$GATA1_06 __MNAGATAANR
+
V$GATA2_02 __NNWGATAASA
+
V$GATA2_03 __ASAGATAANA
+
V$GATA3_02 __NGAGATAANA
+
V$GATA3_03 __ANAGATMWWA
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U007146Gata2GATA binding protein 2
U018415Gata6GATA binding protein 6
U022278Gata3GATA binding protein 3
U023762Gata5GATA binding protein 5
U035668Gata4GATA binding protein 4
U039236Gata1GATA binding protein 1

GO terms:
GO:0008270 zinc ion binding
GO:0045941 positive regulation of transcription
GO:0016563 transcriptional activator activity
GO:0001701 embryonic development (sensu Mammalia)
GO:0006909 phagocytosis
GO:0001709 cell fate determination
GO:0005198 structural molecule activity
GO:0001889 liver development
GO:0007507 heart development
GO:0007018 microtubule-based movement
GO:0005874 microtubule
GO:0030182 neuron differentiation

Protein domains:
IPR000679 Zn-finger, GATA type
IPR008013 GATA-type transcription activator, N-terminal
IPR006209 EGF-like
IPR001093 IMP dehydrogenase/GMP reductase
IPR000217 Tubulin

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend