CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_HEN1

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: HEN1       TFBS class: bHLH = Helix-loop-helix       Code: 1.2.4.3.1
Pattern = GGGNCGCAGCTGCGNCCC (core elements are bold)     Class: HEN1     Allowed mismatch: 0.2     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$HEN1_02 NNGGGNCGCAGCTGCGNCCCNN
+
V$HEN1_01 NNNGGNCNCAGCTGCGNCCCNN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U022064Nhlh1nescient helix loop helix 1

GO terms:
GO:0030154 cell differentiation
GO:0007275 development

Protein domains:
IPR001092 Basic helix-loop-helix dimerisation region bHLH
IPR011598 Helix-loop-helix DNA-binding

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend