CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_HLF

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: HLF       TFBS class: bZIP = Leucine zipper       Code: 1.1.4.0
Pattern = GTTACRTAAT (core elements are bold)     Class: HLF     Allowed mismatch: 0.178     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$VBP_01 GTTACRTMAT
+
V$HLF_01 GTTACRYAAT
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U033262HlfMus musculus hepatic leukemia factor (Hlf), mRNA

GO terms:
GO:0048511 rhythmic process

Protein domains:
IPR011700 Basic leucine zipper
IPR004827 Basic-leucine zipper (bZIP) transcription factor
IPR010978 tRNA-binding arm

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend