CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_HNF1

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: HNF1       TFBS class: HOX = Homeobox       Code: 3.1.1.12
Pattern = RGTTAATDATTAMCM (core elements are bold)     Class: HNF1     Allowed mismatch: 0.2     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$HNF1_01 GGTTAATNWTTAMCN
+
V$HNF1_C DGTTAATKAWTNACCAM
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U026615Tcf1transcription factor 1

GO terms:
GO:0045941 positive regulation of transcription
GO:0016563 transcriptional activator activity

Protein domains:
IPR006898 Hepatocyte nuclear factor 1, alpha isoform C-terminal
IPR009057 Homeodomain-like
IPR006897 Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR010982 Lambda repressor-like, DNA-binding
IPR010981 SinR repressor-like, dimerisation
IPR006899 Hepatocyte nuclear factor 1, N-terminal
IPR001093 IMP dehydrogenase/GMP reductase
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend