CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_HNF3

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: HNF3       TFBS class: FH = Fork head       Code: 3.3.2.0
Pattern = TRTTTRYTTW (core elements are bold)     Class: HNF3     Allowed mismatch: 0.053
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$HNF3B_01 KGNANTRTTTRYTTW
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U002787Hnf4ahepatic nuclear factor 4, alpha
U023461Foxa2forkhead box A2
U028212Foxa3forkhead box A3
U033976Foxa1forkhead box A1

GO terms:
GO:0009267 cellular response to starvation
GO:0004872 receptor activity
GO:0004879 ligand-dependent nuclear receptor activity
GO:0003707 steroid hormone receptor activity
GO:0005496 steroid binding
GO:0001678 cell glucose homeostasis

Protein domains:
IPR001766 Fork head transcription factor
IPR008946 Steroid nuclear receptor, ligand-binding
IPR000324 Vitamin D receptor
IPR000003 Retinoid X receptor
IPR001723 Steroid hormone receptor
IPR000536 Ligand-binding region of nuclear hormone receptor
IPR001628 Zn-finger, C4-type steroid receptor

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend