CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_HOXA5

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: HOXA5       TFBS class: HOX = Homeobox       Code: 3.1.1.2.16
Pattern = MTAATGRGGR (core elements are bold)     Class: HOXA5     Allowed mismatch: 0.064
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$HOX13_01 NGRDNKNGHNNAMTAATGRGGRSGNDNGCA
-

Genes (trans-elements):
U-clusterSymbol
Annotation
U027307Hoxa5homeo box A5

GO terms:
GO:0001501 skeletal development
GO:0007275 development
GO:0007389 pattern specification

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend