CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_HSF

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: HSF       TFBS class: HSF = Heat shock       Code: 3.4.1.0
Pattern = RGAABRTTCK (core elements are bold)     Class: HSF     Allowed mismatch: 0.04     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$HSF1_01 RGAANRTTCN
+
V$HSF2_01 NGAANNWTCK
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U016371Hsf1heat shock factor 1

GO terms:
GO:0045120 pronucleus
GO:0006986 response to unfolded protein
GO:0006457 protein folding
GO:0008285 negative regulation of cell proliferation
GO:0007283 spermatogenesis

Protein domains:
IPR010542 Vertebrate heat shock transcription factor
IPR000232 Heat shock factor (HSF)-type, DNA-binding
IPR002341 HSF/ETS, DNA-binding

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend