CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_HTF

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: HTF       TFBS class: bZIP = Leucine zipper       Code: 1.1
Pattern = ATGACGTGKC (core elements are bold)     Class: HTF     Allowed mismatch: 0.166
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$HTF_01 NNNSRNRATGACGTGKCNSSSSNN
-

Genes (trans-elements):
U-clusterSymbol
Annotation
U016892Htf9cHpaII tiny fragments locus 9c

GO terms:
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
GO:0003723 RNA binding
GO:0004672 protein kinase activity
GO:0005524 ATP binding
GO:0006468 protein amino acid phosphorylation

Protein domains:
IPR010280 (Uracil-5)-methyltransferase
IPR001093 IMP dehydrogenase/GMP reductase
IPR000051 SAM (and some other nucleotide) binding motif

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend