CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_IK

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: IK       TFBS class: ZF = Zinc finger       Code: 2.3.2.2.9
Pattern = TGGGAATRCC (core elements are bold)     Class: IK     Allowed mismatch: 0.054
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$IK1_01 NHNTGGGAATRCC
+
V$IK2_01 NNNTGGGAWNNC
+
V$IK3_01 TNYTGGGAATACC
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U018594IkIK cytokine

Protein domains:
IPR012492 RED-like, C-terminal
IPR001093 IMP dehydrogenase/GMP reductase

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend