CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_LHX

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: LHX       TFBS class: LIM-homeo       Code: 3.1.3.1.5
Pattern = AATTAATTAA (core elements are bold)     Class: LHX     Allowed mismatch: 0.153     Palindrome
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$LHX3_01 AATTAATTAA
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U022415Lhx3LIM homeobox protein 3

GO terms:
GO:0008270 zinc ion binding

Protein domains:
IPR007107 LIM homeobox
IPR009057 Homeodomain-like
IPR001093 IMP dehydrogenase/GMP reductase
IPR001781 Zn-binding protein, LIM
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend