CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_MEISHOX

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: MEISHOX       TFBS class: HOX = Homeobox       Code: 3.1.1.1.3
Pattern = TGACAGTTTTAY (core elements are bold)     Class: MEISHOX     Allowed mismatch: 0.181
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$MEIS1AHOXA9_01 TGACAGKTTTAYGA
+
V$MEIS1BHOXA9_02 TGACASTTTWAYRR
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U027310Hoxa9homeo box A9
U032546Meis1myeloid ecotropic viral integration site 1

GO terms:
GO:0003705 RNA polymerase II transcription factor activity, enhancer binding
GO:0007275 development
GO:0007389 pattern specification
GO:0009887 organogenesis
GO:0016563 transcriptional activator activity

Protein domains:
IPR009057 Homeodomain-like
IPR001356 Homeobox
IPR000047 Helix-turn-helix motif, lambda-like repressor
IPR006711 Hox9 activation region
IPR001093 IMP dehydrogenase/GMP reductase
IPR011074 Phosphatidylinositol transfer protein-like, N-terminal
IPR009079 Four-helical cytokine

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend