CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_NKX

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: NKX       TFBS class: HOX = Homeobox       Code: 3.1.1.15
Pattern = TTAAGTR (core elements are bold)     Class: NKX     Allowed mismatch: 0.044
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$NKX25_01 ___TYAAGTG
+
V$NKX25_02 __CWTAATTG
+
V$NKX61_01 TWTTTAATTGGTT
+
V$NKX3A_01 _NWATAAGTATW
+
V$NKX22_01 ___TTAAGTR
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U037583Nkx2-5NK2 transcription factor related, locus 5 (Drosophila)

GO terms:
GO:0007275 development
GO:0007507 heart development
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0016564 transcriptional repressor activity

Protein domains:
IPR009057 Homeodomain-like
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend