CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_OCT

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: OCT       TFBS class: POU = Octamer (POU)       Code: 3.1.2
Pattern = ATGCAAAT (core elements are bold)     Class: OCT     Allowed mismatch: 0.11
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$OCT1_01 __NNNNWTATGCAAATNTN
+
V$OCT1_02 _____NNNNTGMATATTCN
-
V$OCT1_04 NNNNNNNWATGCAAATNNNWNNA
+
V$OCT1_05 _____AATATGCAAATB
-
V$OCT1_06 _____NRYATWSMASTN
-
V$OCT1_Q6 ____NNNNATGCAAATNA
+
V$OCT_C ______RTATGCAAAT
-

Genes (trans-elements):
U-clusterSymbol
Annotation
U022001Pou2f1POU domain, class 2, transcription factor 1

GO terms:
GO:0016481 negative regulation of transcription

Protein domains:
IPR009057 Homeodomain-like
IPR000972 Octamer-binding transcription factor
IPR010982 Lambda repressor-like, DNA-binding
IPR000327 POU
IPR001093 IMP dehydrogenase/GMP reductase
IPR007103 POU homeobox
IPR001356 Homeobox

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend