CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_PAX2

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: PAX2       TFBS class: PAX = Paired box       Code: 3.2.2.2.1
Pattern = YNGTCAYGBRTKA (core elements are bold)     Class: PAX2     Allowed mismatch: 0.139
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$PAX2_01 NNNNGTCANGNRTKANNNN
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U019493Pax2paired box gene 2

GO terms:
GO:0001709 cell fate determination
GO:0030154 cell differentiation
GO:0001747 eye morphogenesis (sensu Mammalia)
GO:0007275 development
GO:0001656 metanephros development
GO:0009887 organogenesis

Protein domains:
IPR009057 Homeodomain-like
IPR001093 IMP dehydrogenase/GMP reductase
IPR001523 Paired box protein, N-terminal

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend