CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_PAX3

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: PAX3       TFBS class: PAX = Paired box       Code: 3.2.1.0.2.1
Pattern = TCGTCACRCTTHM (core elements are bold)     Class: PAX3     Allowed mismatch: 0.2
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$PAX3_01 TCGTCACRCTTHM
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U126577Pax3paired box gene 3

GO terms:
GO:0008283 cell proliferation
GO:0001755 neural crest cell migration
GO:0016477 cell migration
GO:0001843 neural tube closure
GO:0003705 RNA polymerase II transcription factor activity, enhancer binding
GO:0007275 development
GO:0007507 heart development
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0009887 organogenesis
GO:0016566 specific transcriptional repressor activity
GO:0007517 muscle development
GO:0016563 transcriptional activator activity
GO:0003682 chromatin binding
GO:0048066 pigmentation

Protein domains:
IPR009057 Homeodomain-like
IPR001356 Homeobox
IPR007104 Paired-like homeobox
IPR001523 Paired box protein, N-terminal

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend