CisView: Mouse (mm6, March2005)
Transcription factor binding site TF_PBX

Database: TRANSFAC
Source: Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, et al. 2003. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
TF group: PBX       TFBS class: HOX = Homeobox       Code: 3.1.1.18
Pattern = ATCAATCAA (core elements are bold)     Class: PBX     Allowed mismatch: 0.183
Overlap with other TFBS Open table
GO-annotations for traget genes Open table

Matrixes from TRANSFAC:
Matrix
Pattern
Orientation
V$PBX1_01 ___ANCAATCAW
+
V$PBX1_02 NNCATCAATCAANNW
+

Genes (trans-elements):
U-clusterSymbol
Annotation
U022020Pbx1pre B-cell leukemia transcription factor 1

GO terms:
GO:0006700 C21-steroid hormone biosynthesis
GO:0001658 ureteric bud branching
GO:0001655 urogenital system development
GO:0009887 organogenesis
GO:0007548 sex differentiation
GO:0030325 adrenal gland development

Protein domains:
IPR000047 Helix-turn-helix motif, lambda-like repressor
IPR009057 Homeodomain-like
IPR001093 IMP dehydrogenase/GMP reductase
IPR001356 Homeobox
IPR005542 PBX

Frequency distribution in CpG-rich and CpG-poor promoters (per 1Mb)

Legend